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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3879024_3879111_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3879024 - 3879111
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
AATTTGAAAGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TCGCTGATAATT
Flanking Amino Acid:
DLMFGFKTTSCLLLDISFDH
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.4
44.7
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
59.2
0.21
1.1
53.7
44.1
Minor 5ss
33.5
-1.9
2.8
36.6
41.8
Minor BPS
44
-0.3
2.2
61.28
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004132
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004244
3875904 - 3881382
5479