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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3881200_3881292_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3881200 - 3881292
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCG
5'SS Class:
strong_major
3'SS Sequence:
GTTCCCCATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
TGTTCCCCATCC
Flanking Amino Acid:
ERAMMEEYAELLQKVTDKGP
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
62.3
43.9
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
72.3
0.5
0.9
62.9
38.7
Minor 5ss
32.7
-2
3
39.3
46.1
Minor BPS
48.9
-0.1
2.1
68.69
42.2

Associated Gene:

Gene:
PTGES3L
Ensembl Gene ID:
ENSAPLG00000004127
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004225
3876525 - 3883978
7454
Gene:
Ensembl Gene ID:
ENSAPLG00000004132
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004244
3875904 - 3881382
5479