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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3883833_3884818_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3883833 - 3884818
Intron Length:
986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGCT
5'SS Class:
major
3'SS Sequence:
TAACTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
AAATGTTTAATT
Flanking Amino Acid:
PLAHGLGDGPSEQEKQERIE
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
66.2
39.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
83.2
0.75
0.8
81
36.1
Minor 5ss
34
-1.8
3.4
48.7
47
Minor BPS
59.5
0.38
1.7
72.19
39

Associated Gene:

Gene:
RUNDC1
Ensembl Gene ID:
ENSAPLG00000022366
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027890
3883356 - 3887961
4606