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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3884978_3885250_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3884978 - 3885250
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
TGGTGTTTCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGCTACTGATTG
Flanking Amino Acid:
PQSVVMERQRMIIDELIKKL
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.8
43.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
70.4
0.46
0.9
65.4
41
Minor 5ss
34.9
-1.7
3.4
42.7
44.4
Minor BPS
45.1
-0.5
1.9
49.99
43.9

Associated Gene:

Gene:
RUNDC1
Ensembl Gene ID:
ENSAPLG00000022366
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027890
3883356 - 3887961
4606