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Intron Name: Anas_platyrhynchos_platyrhynchos_28_3888165_3888379_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3888165 - 3888379

Intron Length:

215

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCGCG

5'SS Class:

strong_major

3'SS Sequence:

CGGTGTGTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCCCAT

U12 Branch Point Sequence:

CGGGGCCCATCG

Flanking Amino Acid:

YSGRKAVIVKNIDDGTSDRP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

65.8

40.2

Major BPS

45.8

-0.2

1.5

52.1

45.2

Major PPT

69.5

0.44

1.1

64.9

45.6

Minor 5ss

31.2

-2.1

3.2

38.5

46.7

Minor BPS

30.8

-1.5

2.1

28.44

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004107

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004204

3888084 - 3890038

1955