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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3889248_3889989_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3889248 - 3889989
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTGACTCTAATG
Flanking Amino Acid:
RREAKVKFEERYKTGKNKWF
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
74.8
38.1
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
88.6
0.87
0.7
80.8
31.2
Minor 5ss
34.2
-1.8
2.8
40.6
45.6
Minor BPS
52.6
-0
1.8
60.51
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004107
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004204
3888084 - 3890038
1955