About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3892876_3893098_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3892876 - 3893098
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGTGGG
5'SS Class:
major
3'SS Sequence:
TCTCCATCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTTCTCTCCATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.3
43.1
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
79.8
0.67
0.8
73.6
30.1
Minor 5ss
25.6
-2.8
3.1
31.6
42.7
Minor BPS
49.3
-0
1.9
67.51
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027117
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037425
3892686 - 3899386
6701