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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3894280_3894423_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3894280 - 3894423
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGTG
5'SS Class:
major
3'SS Sequence:
TCCCCCCACGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
TTTCCCCCCACG
Flanking Amino Acid:
CALITFEALAVAQRILKTKN
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.2
67.8
43.5
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
67.3
0.39
0.8
61.5
27.7
Minor 5ss
38.4
-1.3
3.7
55
49.2
Minor BPS
45.9
-0.4
2.3
62.27
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027117
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037060
3893099 - 3899722
6624