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Intron Name: Anas_platyrhynchos_platyrhynchos_28_3904789_3905288_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3904789 - 3905288

Intron Length:

500

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTCGG

5'SS Class:

strong_major

3'SS Sequence:

CCCTCGTTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTCAC

U12 Branch Point Sequence:

CGGGTCTCACGG

Flanking Amino Acid:

KIDSVWPFDQVADAMRQMQE

Intron Amino Acid Position:

358

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.8

0.89

0.9

68.8

43.8

Major BPS

67.3

0.43

1.2

71.3

36.7

Major PPT

77.9

0.63

0.8

71.4

32.9

Minor 5ss

28.2

-2.5

2.7

32.3

42.2

Minor BPS

35.8

-1.2

1.9

30.75

41.7

Associated Gene:

Gene:

VAT1

Ensembl Gene ID:

ENSAPLG00000004079

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004169

3903687 - 3908982

5296