Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3905531_3906530_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3905531 - 3906530

Intron Length:

1000

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

GTCTTCCCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTTCAT

U12 Branch Point Sequence:

TTGACCCCAGTT

Flanking Amino Acid:

LKPMGKLITYGVANLLTGQK

Intron Amino Acid Position:

277

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

72.6

38.9

Major BPS

0.65

1.1

77.4

37.3

Major PPT

76.9

0.6

0.8

74.4

30.9

Minor 5ss

31.3

-2.1

3.3

40.9

45.3

Minor BPS

44.8

-0.3

2.1

66.02

44.5

Associated Gene:

Gene:

VAT1

Ensembl Gene ID:

ENSAPLG00000004079

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004169

3903687 - 3908982

5296