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Intron Name: Anas_platyrhynchos_platyrhynchos_28_3907316_3908622_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3907316 - 3908622

Intron Length:

1307

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGAGGG

5'SS Class:

major

3'SS Sequence:

TGTTTGGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAG

U12 Branch Point Sequence:

CGTTTCACACCT

Flanking Amino Acid:

ALGDGVNDRQVGDKVMVLAR

Intron Amino Acid Position:

121

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

56.8

42.6

Major BPS

75.6

0.64

1.5

34.5

Major PPT

0.59

73.5

41.9

Minor 5ss

-3.1

3.3

28.9

43.6

Minor BPS

45.2

-0.2

65.41

44.9

Associated Gene:

Gene:

VAT1

Ensembl Gene ID:

ENSAPLG00000004079

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004169

3903687 - 3908982

5296