Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3952122_3953050_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3952122 - 3953050

Intron Length:

929

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAACTG

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATCAA

U12 Branch Point Sequence:

GTTTTATCAAGT

Flanking Amino Acid:

DAWMEGTSYKAIQQKNNVAV

Intron Amino Acid Position:

1783

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

68.8

42.1

Major BPS

0.72

80.3

31.7

Major PPT

86.3

0.82

0.8

80.6

31.4

Minor 5ss

34.9

-1.7

3.3

47.4

Minor BPS

49.3

0.02

2.1

73.97

42.5

Associated Gene:

Gene:

BRCA1

Ensembl Gene ID:

ENSAPLG00000003524

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019034

3951206 - 3973857

22652

ENSAPLT00000003630

3951206 - 3973790

22585

ENSAPLT00000020151

3951206 - 3972643

21438