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Intron Name: Anas_platyrhynchos_platyrhynchos_28_3953112_3953606_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3953112 - 3953606

Intron Length:

495

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAATGTT

5'SS Class:

strong_major

3'SS Sequence:

CTTGGAATCCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATTTTCTTATCT

Flanking Amino Acid:

KQLHLFTHKMNSTAVVVVQP

Intron Amino Acid Position:

1763

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

0.9

80.3

32.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

61.6

0.26

51.8

41.8

Minor 5ss

38.1

-1.3

3.5

54.6

Minor BPS

75.3

0.87

1.5

89.98

Associated Gene:

Gene:

BRCA1

Ensembl Gene ID:

ENSAPLG00000003524

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020151

3951206 - 3972643

21438

ENSAPLT00000019034

3951206 - 3973857

22652

ENSAPLT00000003630

3951206 - 3973790

22585