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Intron Name: Anas_platyrhynchos_platyrhynchos_28_3955661_3956522_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3955661 - 3956522

Intron Length:

862

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTATTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

GCTTTTTTATTT

Flanking Amino Acid:

SFKEGMILDEENFEVRGDVI

Intron Amino Acid Position:

1692

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.3

0.93

0.9

87.9

29.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.95

0.7

84.8

35.4

Minor 5ss

44.7

-0.6

3.2

66.4

45.1

Minor BPS

58.3

0.34

1.6

71.36

40.7

Associated Gene:

Gene:

BRCA1

Ensembl Gene ID:

ENSAPLG00000003524

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020151

3951206 - 3972643

21438

ENSAPLT00000019034

3951206 - 3973857

22652

ENSAPLT00000003630

3951206 - 3973790

22585