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Intron Name: Anas_platyrhynchos_platyrhynchos_28_3956564_3957046_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3956564 - 3957046

Intron Length:

483

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGTATA

5'SS Class:

major

3'SS Sequence:

TCTTTTTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATAAAA

U12 Branch Point Sequence:

TATAAAATGACT

Flanking Amino Acid:

AGRKWVVSYQWVVQSFKEGM

Intron Amino Acid Position:

1678

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

1.1

80.1

34.8

Major BPS

65.3

0.38

71.6

30.1

Major PPT

0.94

0.5

92.2

18.2

Minor 5ss

41.3

-1

2.8

52.2

44.4

Minor BPS

45.3

-0.2

2.1

68.84

Associated Gene:

Gene:

BRCA1

Ensembl Gene ID:

ENSAPLG00000003524

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020151

3951206 - 3972643

21438

ENSAPLT00000019034

3951206 - 3973857

22652

ENSAPLT00000003630

3951206 - 3973790

22585