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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3958069_3959581_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3958069 - 3959581
Intron Length:
1513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
AACTGTTATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
VASGLKQSEHMVVQKFARKT
Intron Amino Acid Position:
1623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
78
38.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
69.9
0.45
1
66.4
43.5
Minor 5ss
36.5
-1.5
2.7
41.6
38.2
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
BRCA1
Ensembl Gene ID:
ENSAPLG00000003524
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020151
3951206 - 3972643
21438
ENSAPLT00000019034
3951206 - 3973857
22652
ENSAPLT00000003630
3951206 - 3973790
22585