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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3959905_3960331_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3959905 - 3960331
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGTTG
5'SS Class:
major
3'SS Sequence:
TCTTTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTCAAGAATT
Flanking Amino Acid:
AVQEYSQSEEENADEKSGTK
Intron Amino Acid Position:
1515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.2
70.4
42.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
86.3
0.82
0.6
85.6
21.7
Minor 5ss
45.9
-0.4
3.2
64.1
47.4
Minor BPS
51.6
0.13
2
78.09
37.6

Associated Gene:

Gene:
BRCA1
Ensembl Gene ID:
ENSAPLG00000003524
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020151
3951206 - 3972643
21438
ENSAPLT00000019034
3951206 - 3973857
22652
ENSAPLT00000003630
3951206 - 3973790
22585