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Intron Name: Anas_platyrhynchos_platyrhynchos_28_3960490_3960651_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3960490 - 3960651

Intron Length:

162

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAACTTT

5'SS Class:

strong_major

3'SS Sequence:

TCTTCCTCTCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAC

U12 Branch Point Sequence:

CTTTGTTTCACT

Flanking Amino Acid:

NSEVKELEIERSPELPYPSL

Intron Amino Acid Position:

1462

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

81.2

33.8

Major BPS

72.3

0.55

1.2

77.4

37.4

Major PPT

73.9

0.54

Minor 5ss

49.1

-0.1

73.2

43.7

Minor BPS

55.3

0.25

2.2

78.9

Associated Gene:

Gene:

BRCA1

Ensembl Gene ID:

ENSAPLG00000003524

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020151

3951206 - 3972643

21438

ENSAPLT00000019034

3951206 - 3973857

22652

ENSAPLT00000003630

3951206 - 3973790

22585