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Intron Name: Anas_platyrhynchos_platyrhynchos_28_3960785_3962539_R

Intron Information:

Intron Rank:

Intron Class:

major_hybrid

Intron Phase:

Intron Coordinates:

3960785 - 3962539

Intron Length:

1755

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATAGC

5'SS Class:

strong_major

3'SS Sequence:

TTTAAAAAAAAAG|G

3'SS Class:

major_hybrid

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTTTTTAAAA

Flanking Amino Acid:

TLAVEQTRQRGAESTSEGSL

Intron Amino Acid Position:

1418

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

78.6

35.9

Major BPS

90.4

0.7

90.2

19.3

Major PPT

49.2

-0

1.2

48.1

Minor 5ss

35.4

-1.7

2.8

45.8

42.3

Minor BPS

76.9

0.84

1.2

83.98

29.3

Associated Gene:

Gene:

BRCA1

Ensembl Gene ID:

ENSAPLG00000003524

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019034

3951206 - 3973857

22652

ENSAPLT00000003630

3951206 - 3973790

22585

ENSAPLT00000020151

3951206 - 3972643

21438