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Intron Name: Anas_platyrhynchos_platyrhynchos_28_3962712_3964282_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3962712 - 3964282

Intron Length:

1571

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

GCATGGCTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

AGTTTGCTAATG

Flanking Amino Acid:

FSQGEILSTQQKNAMQNNLK

Intron Amino Acid Position:

1361

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.96

0.8

77.5

32.9

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

66.5

0.37

57.7

Minor 5ss

26.6

-2.7

30.5

43.3

Minor BPS

-0.5

2.3

54.66

40.8

Associated Gene:

Gene:

BRCA1

Ensembl Gene ID:

ENSAPLG00000003524

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020151

3951206 - 3972643

21438

ENSAPLT00000019034

3951206 - 3973857

22652

ENSAPLT00000003630

3951206 - 3973790

22585