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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3972065_3972562_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3972065 - 3972562
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCAT
5'SS Class:
major
3'SS Sequence:
GGTGTTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTTTTAAAA
Flanking Amino Acid:
CPLCKTEVTKRSLTENSRFK
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
71.5
39.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.7
0.56
1
70.4
44.5
Minor 5ss
32.5
-2
3.4
47.3
48.1
Minor BPS
66.3
0.51
1.5
75.65
35.9

Associated Gene:

Gene:
BRCA1
Ensembl Gene ID:
ENSAPLG00000003524
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019034
3951206 - 3973857
22652
ENSAPLT00000003630
3951206 - 3973790
22585