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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3977333_3978652_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3977333 - 3978652
Intron Length:
1320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTCTGTTAATC
Flanking Amino Acid:
IKYIDEDKDEVSVNSKEEYE
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.8
30.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
44.3
-0.6
2.8
58.5
46.3
Minor BPS
54.4
0.12
2
68
37.8

Associated Gene:

Gene:
NBR1
Ensembl Gene ID:
ENSAPLG00000003234
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041040
3974762 - 3991211
16450
ENSAPLT00000003327
3977099 - 3991211
14113