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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3980718_3981122_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3980718 - 3981122
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
CTTTCTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
GTTGCTTCAATT
Flanking Amino Acid:
PEWFTSYLETFREQVVKETV
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
90.1
0.9
0.6
88.5
20.9
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
60.7
0.42
1.6
76.63
40.5

Associated Gene:

Gene:
NBR1
Ensembl Gene ID:
ENSAPLG00000003234
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003327
3977099 - 3991211
14113
ENSAPLT00000041040
3974762 - 3991211
16450