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Intron Name: Anas_platyrhynchos_platyrhynchos_28_3985396_3985880_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3985396 - 3985880

Intron Length:

485

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAATG

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTGAT

U12 Branch Point Sequence:

TGTTGATGAAAA

Flanking Amino Acid:

IPSVDLLTAQDLLSFELLDI

Intron Amino Acid Position:

534

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

0.9

77.9

36.7

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

88.3

0.86

0.6

85.2

22.2

Minor 5ss

36.4

-1.5

3.1

48.5

47.2

Minor BPS

46.3

-0.2

2.2

64.07

41.4

Associated Gene:

Gene:

NBR1

Ensembl Gene ID:

ENSAPLG00000003234

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041040

3974762 - 3991211

16450

ENSAPLT00000003327

3977099 - 3991211

14113