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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3989911_3990330_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3989911 - 3990330
Intron Length:
420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTCTTCATATCT
Flanking Amino Acid:
LFAGPPITEQPAATEEHTAA
Intron Amino Acid Position:
909

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
29.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
92
0.94
0.7
88.3
28.9
Minor 5ss
36.6
-1.5
3.4
52
45.2
Minor BPS
51.2
0.12
1.9
71.92
45.2

Associated Gene:

Gene:
NBR1
Ensembl Gene ID:
ENSAPLG00000003234
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041040
3974762 - 3991211
16450
ENSAPLT00000003327
3977099 - 3991211
14113