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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3996330_3996951_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3996330 - 3996951
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTGAAATTAATT
Flanking Amino Acid:
VASIISDDNTYNICTWTKVR
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
0.9
78.6
29.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
93.2
0.97
0.6
88.8
20.4
Minor 5ss
33.8
-1.8
2.9
44
38.6
Minor BPS
49.7
0.06
1.8
68.08
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019572
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017811
3995747 - 3999569
3823