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Intron Name: Anas_platyrhynchos_platyrhynchos_28_4011733_4012259_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4011733 - 4012259

Intron Length:

527

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGGAAG

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTCTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTAAT

U12 Branch Point Sequence:

ATATCCCACATT

Flanking Amino Acid:

SSALFNRQPEWVVYHELVLT

Intron Amino Acid Position:

1123

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

71.3

40.1

Major BPS

86.7

0.91

0.7

84.2

21.8

Major PPT

84.3

0.77

0.7

79.4

26.2

Minor 5ss

31.8

-2.1

3.1

36.5

41.9

Minor BPS

44.9

-0.3

2.3

67.78

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002788

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043752

4000247 - 4012886

12640

ENSAPLT00000002877

4000152 - 4012479

12328