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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_401708_456676_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
401708 - 456676
Intron Length:
54969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CATTTATTATAT
Flanking Amino Acid:
ELCGPHNFSAVFTKYGKCYM
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
85.9
0.81
0.7
80.7
24.6
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
48
-0
1.9
67.23
43.1

Associated Gene:

Gene:
ASIC2
Ensembl Gene ID:
ENSAPLG00000009431
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009829
401168 - 510023
108856