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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4036440_4036542_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4036440 - 4036542
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCACCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TCCTCTCCACCC
Flanking Amino Acid:
DQQVPFTFPQQPPGHAGPGC
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
71.2
0.53
1
61
37.5
Major PPT
72.7
0.51
0.8
66.2
28.7
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
43.6
-0.5
2
54.53
43.9

Associated Gene:

Gene:
ETV4
Ensembl Gene ID:
ENSAPLG00000002749
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002787
4022224 - 4036637
14414