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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4117681_4118948_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4117681 - 4118948
Intron Length:
1268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAAGG
5'SS Class:
major
3'SS Sequence:
CTCCTCCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTTAAAA
Flanking Amino Acid:
RGNYNRTTKTGRTRVRKKPS
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
62.5
43.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
71.6
0.49
1
75
27.5
Minor 5ss
26
-2.8
3
30.8
42.8
Minor BPS
68.5
0.58
1.6
79.85
35.1

Associated Gene:

Gene:
CFAP97D1
Ensembl Gene ID:
ENSAPLG00000002730
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024079
4117392 - 4120310
2919
ENSAPLT00000002751
4117587 - 4120926
3340