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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4128611_4129554_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4128611 - 4129554
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CTTCCCTGTACC
Flanking Amino Acid:
KPLYDQSSDKEDCDCEGYFN
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.5
33.9
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
88.3
0.86
0.8
83.9
31
Minor 5ss
31.5
-2.1
3
42.7
44.3
Minor BPS
55.7
0.16
1.9
69.37
41.8

Associated Gene:

Gene:
MPP3
Ensembl Gene ID:
ENSAPLG00000007360
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002750
4122981 - 4140381
17401