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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4134566_4136082_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4134566 - 4136082
Intron Length:
1517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTATTTACTT
Flanking Amino Acid:
IMRGGAADRSGLVHVGDELR
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
77.3
31.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.9
0.83
0.7
84.4
30.5
Minor 5ss
44.3
-0.6
2.9
57.9
42.1
Minor BPS
64
0.52
1.8
84.41
36.8

Associated Gene:

Gene:
MPP3
Ensembl Gene ID:
ENSAPLG00000007360
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048353
4131418 - 4140381
8964
ENSAPLT00000031658
4128609 - 4140381
11773
ENSAPLT00000007643
4128609 - 4140381
11773
ENSAPLT00000002750
4122981 - 4140381
17401