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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4135604_4135728_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4135604 - 4135728
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AAAGTTTGACCT
Flanking Amino Acid:
FPIDSKGSLCEGAHPDFIKL
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.3
36.4
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
44.3
-0.6
2.8
53.8
44.4
Minor BPS
44.4
-0.3
1.7
56.51
40

Associated Gene:

Gene:
MPP3
Ensembl Gene ID:
ENSAPLG00000007360
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022870
4135569 - 4140381
4813