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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4136165_4137118_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4136165 - 4137118
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATGTTTTATTT
Flanking Amino Acid:
VRLVKNKEPLGATIRRDEHT
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
31.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
87.7
0.85
0.8
85.7
33.4
Minor 5ss
50.1
0.01
2.4
63.4
43.4
Minor BPS
54.8
0.23
1.6
71.82
40.2

Associated Gene:

Gene:
MPP3
Ensembl Gene ID:
ENSAPLG00000007360
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031658
4128609 - 4140381
11773
ENSAPLT00000022870
4135569 - 4140381
4813
ENSAPLT00000007643
4128609 - 4140381
11773
ENSAPLT00000002750
4122981 - 4140381
17401
ENSAPLT00000048353
4131418 - 4140381
8964