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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4137257_4137998_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4137257 - 4137998
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
TTTCTTTAAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
CTTTCTTTAAAC
Flanking Amino Acid:
LQLLSTPHLRAMLVVHDTVA
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
70.2
35.7
Major BPS
73.9
0.59
1
81
30.2
Major PPT
80
0.67
0.9
77.7
34.4
Minor 5ss
31.7
-2.1
3
31.6
42.5
Minor BPS
75.2
0.77
1.3
79.33
36

Associated Gene:

Gene:
MPP3
Ensembl Gene ID:
ENSAPLG00000007360
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002750
4122981 - 4140381
17401
ENSAPLT00000048353
4131418 - 4140381
8964
ENSAPLT00000031658
4128609 - 4140381
11773
ENSAPLT00000022870
4135569 - 4140381
4813
ENSAPLT00000007643
4128609 - 4140381
11773