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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4138080_4138516_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4138080 - 4138516
Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTAAAG
Flanking Amino Acid:
LHSAAGLVEDVIEELQTAPV
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
81.4
26.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.2
0.7
1
82.5
32.7
Minor 5ss
32
-2.1
2.7
37.8
40.1
Minor BPS
63.9
0.3
1.5
68.85
38.6

Associated Gene:

Gene:
MPP3
Ensembl Gene ID:
ENSAPLG00000007360
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007643
4128609 - 4140381
11773
ENSAPLT00000002750
4122981 - 4140381
17401
ENSAPLT00000048353
4131418 - 4140381
8964
ENSAPLT00000022870
4135569 - 4140381
4813