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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4138595_4139178_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4138595 - 4139178
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGTT
5'SS Class:
strong_major
3'SS Sequence:
TAATCTTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATATACTCGAGT
Flanking Amino Acid:
SEKSLSYLMKIHEKLRHYER
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
81.3
30.4
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
79.4
0.66
0.8
77.8
36
Minor 5ss
35.7
-1.6
3.7
55.7
48.5
Minor BPS
47.2
-0.1
2
67.72
42.7

Associated Gene:

Gene:
MPP3
Ensembl Gene ID:
ENSAPLG00000007360
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048353
4131418 - 4140381
8964
ENSAPLT00000022870
4135569 - 4140381
4813
ENSAPLT00000007643
4128609 - 4140381
11773
ENSAPLT00000002750
4122981 - 4140381
17401