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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4139298_4140270_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4139298 - 4140270
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTAAT
5'SS Class:
strong_major
3'SS Sequence:
AATTTAAACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CTGTCTTGAATT
Flanking Amino Acid:
MPVLSEDSGLHETLALLT
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
87
30
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
60.4
0.24
1
57.6
41.7
Minor 5ss
42.9
-0.8
2.7
59.7
44.8
Minor BPS
65.1
0.55
1.4
76.18
41.3

Associated Gene:

Gene:
MPP3
Ensembl Gene ID:
ENSAPLG00000007360
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031658
4128609 - 4140381
11773
ENSAPLT00000022870
4135569 - 4140381
4813
ENSAPLT00000007643
4128609 - 4140381
11773
ENSAPLT00000002750
4122981 - 4140381
17401
ENSAPLT00000048353
4131418 - 4140381
8964