Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4169424_4172523_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4169424 - 4172523

Intron Length:

3100

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

ATG|GCACCCCCA

5'SS Class:

weak_major

3'SS Sequence:

GATGAAGAGCCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGATGAA

U12 Branch Point Sequence:

TTCTGCTCAGCC

Flanking Amino Acid:

FLKDVDLSKMEPVITLEESK

Intron Amino Acid Position:

398

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.1

0.17

1.3

42.5

Major BPS

60.3

0.26

1.2

51.7

43.9

Major PPT

47.3

-0.1

1.2

32.9

44.8

Minor 5ss

32.4

-2

4.2

45.5

44.4

Minor BPS

48.6

-0.1

2.2

66.44

45.1

Associated Gene:

Gene:

CDK12

Ensembl Gene ID:

ENSAPLG00000013281

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013847

4169307 - 4180373

11067