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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4173366_4173856_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4173366 - 4173856
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
CTGATTTTACTC
Flanking Amino Acid:
NLELAQLELISRLCGSPCPA
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
72
39.3
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
82.3
0.73
0.8
80.3
31.7
Minor 5ss
31.8
-2.1
3.5
46.7
48.6
Minor BPS
47.7
-0.1
1.6
53.34
39.6

Associated Gene:

Gene:
CDK12
Ensembl Gene ID:
ENSAPLG00000013281
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013847
4169307 - 4180373
11067