Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4173935_4174970_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4173935 - 4174970

Intron Length:

1036

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCGTGAC

U12 Branch Point Sequence:

CTGTCGTGACCT

Flanking Amino Acid:

YTPAIDVWSCGCILGELFTK

Intron Amino Acid Position:

292

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

75.2

36.3

Major BPS

58.8

0.22

1.3

44.3

Major PPT

87.8

0.85

0.7

80.3

31.7

Minor 5ss

33.5

-1.9

3.1

36.8

40.4

Minor BPS

46.1

-0.2

2.4

68.2

48.4

Associated Gene:

Gene:

CDK12

Ensembl Gene ID:

ENSAPLG00000013281

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026358

4173853 - 4180373

6521

ENSAPLT00000013847

4169307 - 4180373

11067