About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4175118_4176537_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4175118 - 4176537
Intron Length:
1420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTGG
5'SS Class:
major
3'SS Sequence:
TACCCTTTGCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGGAATTAATA
Flanking Amino Acid:
IKCSNILLNNRVLWFSMSIY
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.6
46.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
59.6
0.22
1.1
59.5
40.5
Minor 5ss
48.8
-0.1
2.6
65
46.2
Minor BPS
50.8
0.02
1.9
65.31
41.3

Associated Gene:

Gene:
CDK12
Ensembl Gene ID:
ENSAPLG00000013281
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026358
4173853 - 4180373
6521