About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4175679_4176537_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4175679 - 4176537
Intron Length:
859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTGG
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAC
U12 Branch Point Sequence:
TCAGTTCAAACC
Flanking Amino Acid:
IKCSNILLNNSGQIKLADFG
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.6
46.7
Major BPS
67.4
0.43
1
73.2
28.9
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
48.8
-0.1
2.6
65
46.2
Minor BPS
42.6
-0.5
1.9
50.45
40.9

Associated Gene:

Gene:
CDK12
Ensembl Gene ID:
ENSAPLG00000013281
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013847
4169307 - 4180373
11067