Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4179016_4180335_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4179016 - 4180335

Intron Length:

1320

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTCAGAGGG

5'SS Class:

major

3'SS Sequence:

TTTCGGAGTTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAC

U12 Branch Point Sequence:

GTTGTATTAACT

Flanking Amino Acid:

CLWKEAEILAGPKEILPPKP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.8

0.33

1.4

51.7

45.7

Major BPS

81.9

0.79

0.8

81.9

Major PPT

65.7

0.35

62.9

Minor 5ss

24.8

-2.9

Minor BPS

64.5

0.53

1.7

81.55

39.8

Associated Gene:

Gene:

CDK12

Ensembl Gene ID:

ENSAPLG00000013281

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026358

4173853 - 4180373

6521

ENSAPLT00000013847

4169307 - 4180373

11067