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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4192385_4192824_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4192385 - 4192824
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTACA
5'SS Class:
major
3'SS Sequence:
TTTCCCCATCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CTTTCACTAAGC
Flanking Amino Acid:
CLETLQKALKVSSLPAMTDR
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
72.7
38.3
Major BPS
77.7
0.69
1
81
30.2
Major PPT
78.8
0.65
0.8
70.6
35.2
Minor 5ss
31
-2.2
2.7
35.2
40.7
Minor BPS
49
-0
2.2
68.37
43

Associated Gene:

Gene:
MED1
Ensembl Gene ID:
ENSAPLG00000030415
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038535
4191975 - 4205431
13457