About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4193141_4193886_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4193141 - 4193886
Intron Length:
746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TTGACATTGATG
Flanking Amino Acid:
KVAHHGENPVSCPELVQHLR
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
83.7
34.5
Major BPS
76.2
0.65
1
67
39.8
Major PPT
90.3
0.91
0.6
88.3
21.3
Minor 5ss
40.7
-1
3.1
56.6
42.9
Minor BPS
52.4
-0
1.8
60.34
41.8

Associated Gene:

Gene:
MED1
Ensembl Gene ID:
ENSAPLG00000030415
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038535
4191975 - 4205431
13457