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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4193916_4194298_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4193916 - 4194298
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGACTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TCCTTCTGACTT
Flanking Amino Acid:
VSCPELVQHLREKNFDEFSK
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
77.5
32.9
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
79.5
0.66
0.9
70
40.5
Minor 5ss
34.2
-1.8
2.9
42.1
45
Minor BPS
50.5
0.09
1.7
67.49
44.2

Associated Gene:

Gene:
MED1
Ensembl Gene ID:
ENSAPLG00000030415
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038535
4191975 - 4205431
13457