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Intron Name: Anas_platyrhynchos_platyrhynchos_28_4194371_4194665_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4194371 - 4194665

Intron Length:

295

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTCTA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTCCTTTTAATT

Flanking Amino Acid:

LVNLYKLPGDNKLKTKMYLA

Intron Amino Acid Position:

118

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

80.8

33.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

100

1.12

0.4

100

Minor 5ss

39.5

-1.2

50.5

Minor BPS

70.4

0.72

1.2

80.3

36.2

Associated Gene:

Gene:

MED1

Ensembl Gene ID:

ENSAPLG00000030415

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038535

4191975 - 4205431

13457