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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4195397_4195753_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4195397 - 4195753
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCTTGG
5'SS Class:
weak_major
3'SS Sequence:
CTCTCTCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
GGATCCCTACTC
Flanking Amino Acid:
SVGYLTPRSGGLLMNLKYYV
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
62.3
44.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
80.9
0.7
0.7
76.1
25.9
Minor 5ss
54.4
0.15
2.1
67.3
43.8
Minor BPS
47.8
-0.1
1.9
57.77
40.7

Associated Gene:

Gene:
MED1
Ensembl Gene ID:
ENSAPLG00000030415
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038535
4191975 - 4205431
13457