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Intron Name: Anas_platyrhynchos_platyrhynchos_28_4196866_4197097_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4196866 - 4197097

Intron Length:

232

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTACCAT

U12 Branch Point Sequence:

TTACCATTATCT

Flanking Amino Acid:

AFIQKLQSCTGIPLFDTPPT

Intron Amino Acid Position:

277

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.94

0.8

75.7

34.4

Major BPS

65.6

0.39

1.3

75.1

39.4

Major PPT

92.5

0.96

0.6

92.6

17.3

Minor 5ss

27.6

-2.6

34.8

41.6

Minor BPS

58.9

0.36

1.9

80.16

40.9

Associated Gene:

Gene:

MED1

Ensembl Gene ID:

ENSAPLG00000030415

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038535

4191975 - 4205431

13457